ERX2868710
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

ArrayExpress-CellType
A549
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Species
Homo sapiens
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5050323
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T11:04:30Z
INSDC status
public
Submitter Id
f6595db0-9128-11e6-95da-3c4a9275d6c8
common name
human
sample description
A549_CTCF_Rep_BR2
sample name
f6595db0-9128-11e6-95da-3c4a9275d6c8

Sequenced DNA Library

library_name
DN470460T:A1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
65906181
Reads aligned (%)
98.3
Duplicates removed (%)
45.6
Number of peaks
44666 (qval < 1E-05)

hg19

Number of total reads
65906181
Reads aligned (%)
97.5
Duplicates removed (%)
46.0
Number of peaks
43690 (qval < 1E-05)

Base call quality data from DBCLS SRA